About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_1782057_1782833_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1782057 - 1782833
Intron Length:
777

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTC|GTGAGTAAT
5'SS Class:
major
3'SS Sequence:
CCGTCACTAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCATCAT
U12 Branch Point Sequence:
CCGTCACTAACA
Flanking Amino Acid:
RTEERAELAESRVRELQEQI
Intron Amino Acid Position:
188

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.9
0.47
1.3
75.8
35.2
Major BPS
63.3
0.33
1.2
65.6
39.7
Major PPT
64.7
0.33
1
58.4
36.2
Minor 5ss
33.5
-1.9
2.8
42.9
38.5
Minor BPS
49.3
-0
2
60.99
44.8

Associated Gene:

Gene:
TPM3
Ensembl Gene ID:
ENSAPLG00000015228
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017434
1777433 - 1789996
12564