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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_1782905_1783130_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1782905 - 1783130
Intron Length:
226

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGCTG
5'SS Class:
strong_major
3'SS Sequence:
CTGTCCCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGAAAAT
U12 Branch Point Sequence:
TTGCTCTGAGCT
Flanking Amino Acid:
AEEADRKYEEVARKLVIIEG
Intron Amino Acid Position:
165

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
69.5
42.7
Major BPS
55.4
0.14
1.3
61.7
41.5
Major PPT
71.4
0.48
0.8
62.2
34.7
Minor 5ss
28.9
-2.4
3.3
37.6
47.1
Minor BPS
54.1
0.21
1.7
74.19
42.4

Associated Gene:

Gene:
TPM3
Ensembl Gene ID:
ENSAPLG00000015228
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036300
1779569 - 1789996
10428
ENSAPLT00000048449
1772739 - 1789996
17258
ENSAPLT00000026763
1777433 - 1789996
12564
ENSAPLT00000048120
1772739 - 1784284
11546
ENSAPLT00000017434
1777433 - 1789996
12564
ENSAPLT00000043039
1772739 - 1789996
17258
ENSAPLT00000015879
1773634 - 1789996
16363
ENSAPLT00000036787
1772739 - 1784284
11546