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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_1783249_1783950_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1783249 - 1783950
Intron Length:
702

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCAAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTGGGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATACAT
U12 Branch Point Sequence:
TTTTTTTGGGCA
Flanking Amino Acid:
EAEKAADESERGMKVIENRA
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
74
38.4
Major BPS
62.6
0.31
1.1
70.6
34.3
Major PPT
81.1
0.7
1
80.6
37
Minor 5ss
33.3
-1.9
2.8
38.7
46.6
Minor BPS
42.4
-0.6
3.5
69.96
36.5

Associated Gene:

Gene:
TPM3
Ensembl Gene ID:
ENSAPLG00000015228
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026763
1777433 - 1789996
12564
ENSAPLT00000048120
1772739 - 1784284
11546
ENSAPLT00000017434
1777433 - 1789996
12564
ENSAPLT00000043039
1772739 - 1789996
17258
ENSAPLT00000015879
1773634 - 1789996
16363
ENSAPLT00000036787
1772739 - 1784284
11546
ENSAPLT00000036300
1779569 - 1789996
10428
ENSAPLT00000048449
1772739 - 1789996
17258