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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_1784085_1789340_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1784085 - 1789340
Intron Length:
5256

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAC|GTACGTATG
5'SS Class:
major
3'SS Sequence:
CCGCTCCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GAGTCAC
U12 Branch Point Sequence:
GCTGAGTCACCC
Flanking Amino Acid:
LELAEKKAADAEAEVASLNR
Intron Amino Acid Position:
81

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.5
1.3
72.9
44.2
Major BPS
49.7
-0
1.3
55.1
42.1
Major PPT
67.2
0.39
0.8
57.6
33.3
Minor 5ss
39.7
-1.2
3
49.9
39.9
Minor BPS
35.4
-1.1
2.3
43.77
43.8

Associated Gene:

Gene:
TPM3
Ensembl Gene ID:
ENSAPLG00000015228
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026763
1777433 - 1789996
12564
ENSAPLT00000017434
1777433 - 1789996
12564
ENSAPLT00000048449
1772739 - 1789996
17258
ENSAPLT00000015879
1773634 - 1789996
16363
ENSAPLT00000043039
1772739 - 1789996
17258
ENSAPLT00000036300
1779569 - 1789996
10428