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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_1789467_1789882_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1789467 - 1789882
Intron Length:
416

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGATGG
5'SS Class:
major
3'SS Sequence:
GCTGCCCTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGGTGAC
U12 Branch Point Sequence:
CCGGGGGTGACG
Flanking Amino Acid:
QKQAEERSKQLEDELAAMQK
Intron Amino Acid Position:
39

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
59.4
42.3
Major BPS
45.4
-0.2
1.4
34.5
43.7
Major PPT
73.6
0.53
0.9
65.6
36
Minor 5ss
30.5
-2.2
3.2
38
46.9
Minor BPS
29.9
-1.7
2.6
28.7
42.9

Associated Gene:

Gene:
TPM3
Ensembl Gene ID:
ENSAPLG00000015228
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017434
1777433 - 1789996
12564
ENSAPLT00000048449
1772739 - 1789996
17258
ENSAPLT00000015879
1773634 - 1789996
16363
ENSAPLT00000043039
1772739 - 1789996
17258
ENSAPLT00000036300
1779569 - 1789996
10428
ENSAPLT00000026763
1777433 - 1789996
12564