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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_1797822_1798165_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
1797822 - 1798165
Intron Length:
344

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CTG|GCTGGCCGC
5'SS Class:
weak_major
3'SS Sequence:
TTTTGTTTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCCTCAG
U12 Branch Point Sequence:
TGCGCCTCAGGC
Flanking Amino Acid:
LLQLETQGTPEIPFHADGRY
Intron Amino Acid Position:
97

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.4
0.22
1.3
49.8
43.3
Major BPS
46.3
-0.2
1.6
53.3
44.2
Major PPT
87.4
0.84
0.8
80.5
37
Minor 5ss
23
-3.1
3.9
30.7
36.8
Minor BPS
42.9
-0.5
2.1
51.01
45.8

Associated Gene:

Gene:
C1orf43
Ensembl Gene ID:
ENSAPLG00000015388
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016057
1796998 - 1799408
2411