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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_1814419_1814859_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1814419 - 1814859
Intron Length:
441

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTCATCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
TCTTCCTTCATC
Flanking Amino Acid:
AENVTITAGQRIDLAVLLGK
Intron Amino Acid Position:
290

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.8
72.1
31.2
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
80.7
0.69
0.8
73.6
36.1
Minor 5ss
26.3
-2.7
3.1
33.4
42
Minor BPS
70.5
0.63
1.7
77.77
38.8

Associated Gene:

Gene:
UBAP2L
Ensembl Gene ID:
ENSAPLG00000015544
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016263
1802786 - 1831275
28490