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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_1822466_1823158_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1822466 - 1823158
Intron Length:
693

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGACC
5'SS Class:
strong_major
3'SS Sequence:
TTGTTCTTTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACAAAA
U12 Branch Point Sequence:
AAAACAAAAACT
Flanking Amino Acid:
SPSSLYTSTASESSSTISSN
Intron Amino Acid Position:
530

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
75.6
33.8
Major BPS
51.5
0.04
0.9
57.3
24.9
Major PPT
85.1
0.79
0.7
81.4
30.6
Minor 5ss
28.1
-2.5
3
34.6
41.4
Minor BPS
42.8
-0.4
2.1
60.19
42.1

Associated Gene:

Gene:
UBAP2L
Ensembl Gene ID:
ENSAPLG00000015544
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016263
1802786 - 1831275
28490