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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_1823349_1823948_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1823349 - 1823948
Intron Length:
600

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCAAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTATTTATTT
Flanking Amino Acid:
SPQKDLTQAKNGFSSVQPTP
Intron Amino Acid Position:
594

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.9
77.9
38.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
92.5
0.96
0.6
92.6
17.3
Minor 5ss
38.7
-1.3
2.8
47.8
47.9
Minor BPS
64.4
0.53
1.7
84.57
36.4

Associated Gene:

Gene:
UBAP2L
Ensembl Gene ID:
ENSAPLG00000015544
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016263
1802786 - 1831275
28490