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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_1824658_1825145_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1824658 - 1825145
Intron Length:
488

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCACA
5'SS Class:
strong_major
3'SS Sequence:
CCTCTCCCTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCTTGAC
U12 Branch Point Sequence:
CTTGGCTTGACA
Flanking Amino Acid:
LPSTTTTQLSSTLPTQQNSL
Intron Amino Acid Position:
670

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
76.7
33.9
Major BPS
56.2
0.15
1.3
51
44.3
Major PPT
79.5
0.66
0.7
73.1
25.1
Minor 5ss
34.2
-1.8
2.8
40.7
45.3
Minor BPS
57.4
0.23
2
69.88
42.9

Associated Gene:

Gene:
UBAP2L
Ensembl Gene ID:
ENSAPLG00000015544
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016263
1802786 - 1831275
28490