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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_1825219_1825779_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1825219 - 1825779
Intron Length:
561

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
CTTCCTTCCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCTCAC
U12 Branch Point Sequence:
GTTCCCTCACTC
Flanking Amino Acid:
SGRTSTSTLLHTSVESEASL
Intron Amino Acid Position:
695

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
70.5
41.3
Major BPS
60.1
0.25
1.1
62.9
34.3
Major PPT
80.3
0.68
0.7
72.7
32
Minor 5ss
32.5
-2
3
38.1
40.9
Minor BPS
51.1
0.02
1.8
65.09
40.5

Associated Gene:

Gene:
UBAP2L
Ensembl Gene ID:
ENSAPLG00000015544
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016263
1802786 - 1831275
28490