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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_1825976_1826072_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1825976 - 1826072
Intron Length:
97

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTTGCC
5'SS Class:
major
3'SS Sequence:
CTTCCTCCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAC
U12 Branch Point Sequence:
GTGACTCTAACT
Flanking Amino Acid:
STRSSVATTSGKAPPNLPPG
Intron Amino Acid Position:
760

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1.1
66.7
40.3
Major BPS
72.3
0.55
1
73.3
28.9
Major PPT
83.8
0.76
0.7
81.1
24
Minor 5ss
33
-1.9
3.3
45.2
42.7
Minor BPS
57.7
0.32
1.7
74.33
42.2

Associated Gene:

Gene:
UBAP2L
Ensembl Gene ID:
ENSAPLG00000015544
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016263
1802786 - 1831275
28490