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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_1846322_1846438_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1846322 - 1846438
Intron Length:
117

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTCCG
5'SS Class:
major
3'SS Sequence:
CCCTGCCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGCTCAC
U12 Branch Point Sequence:
GCTCGCTCACCC
Flanking Amino Acid:
TLRTLRLLVEEPPETPHVSC
Intron Amino Acid Position:
68

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
62.3
43.9
Major BPS
57.5
0.19
1.1
60.7
37.6
Major PPT
75.6
0.58
0.8
68.4
31.9
Minor 5ss
27.7
-2.6
2.9
32.5
42.3
Minor BPS
43
-0.5
2.1
52.68
44.5

Associated Gene:

Gene:
IL6R
Ensembl Gene ID:
ENSAPLG00000023467
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038484
1839549 - 1848149
8601