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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_1846563_1846689_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1846563 - 1846689
Intron Length:
127

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCGCG
5'SS Class:
strong_major
3'SS Sequence:
CACGTCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCCCAT
U12 Branch Point Sequence:
GCCACCCCATCC
Flanking Amino Acid:
GTRAMLWVKRRFAVENATEQ
Intron Amino Acid Position:
109

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.8
40.2
Major BPS
50.9
0.02
1.3
60.4
37.5
Major PPT
65.4
0.35
0.9
58
32.8
Minor 5ss
31.2
-2.1
3.2
38.5
46.7
Minor BPS
39.9
-0.7
2
44.92
42.8

Associated Gene:

Gene:
IL6R
Ensembl Gene ID:
ENSAPLG00000023467
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038484
1839549 - 1848149
8601