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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_1847108_1847197_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1847108 - 1847197
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCCCC
5'SS Class:
strong_major
3'SS Sequence:
GTGTCCCCACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTGTCCC
U12 Branch Point Sequence:
GTGTCCCCACCA
Flanking Amino Acid:
RPEPTPTFTEVDQVTRTWLD
Intron Amino Acid Position:
225

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
65.8
40.2
Major BPS
22.7
-1.7
4
48.8
46.3
Major PPT
65
0.34
1
56.4
40
Minor 5ss
33.7
-1.9
3
42.6
44.4
Minor BPS
46.2
-0.2
2.1
61.32
44.3

Associated Gene:

Gene:
IL6R
Ensembl Gene ID:
ENSAPLG00000023467
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038484
1839549 - 1848149
8601