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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_1847875_1847953_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1847875 - 1847953
Intron Length:
79

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TCCCCTCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
CCTCTCTGACCT
Flanking Amino Acid:
GIALFIAILVRYKQTWQLGA
Intron Amino Acid Position:
351

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.7
84
26.7
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
74.2
0.55
0.7
68.7
25
Minor 5ss
29.9
-2.3
3.2
41.3
45.2
Minor BPS
48.7
-0
1.8
65.4
45.2

Associated Gene:

Gene:
IL6R
Ensembl Gene ID:
ENSAPLG00000023467
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038484
1839549 - 1848149
8601