Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_1858022_1858120_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1858022 - 1858120

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTAAGGCCT

5'SS Class:

major

3'SS Sequence:

TTCTCTTTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTCAA

U12 Branch Point Sequence:

AGTTTCTCAATG

Flanking Amino Acid:

DFILLNFSFKDNFPFDPPFV

Intron Amino Acid Position:

308

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.8

0.68

69.8

40.7

Major BPS

85.7

0.89

0.8

85.9

22.5

Major PPT

90.9

0.92

0.6

84.1

30.9

Minor 5ss

35.1

-1.7

3.4

49.3

40.8

Minor BPS

59.5

0.16

1.6

62.56

39.6

Associated Gene:

Gene:

UBE2Q1

Ensembl Gene ID:

ENSAPLG00000009365

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043756

1855398 - 1864086

8689

ENSAPLT00000009798

1856398 - 1864086

7689