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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_1875804_1876294_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1875804 - 1876294
Intron Length:
491

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGAGAC
5'SS Class:
major
3'SS Sequence:
TGCCTCTTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
TGTCTCCTAATG
Flanking Amino Acid:
EPVYLSSVTLGYLYSQGHLT
Intron Amino Acid Position:
1005

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
63.9
34.3
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
77.4
0.62
0.8
71.5
33
Minor 5ss
37
-1.5
3.3
46.5
43.6
Minor BPS
54.2
-0
1.7
62.16
39.7

Associated Gene:

Gene:
ADAR
Ensembl Gene ID:
ENSAPLG00000009658
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010096
1874142 - 1886874
12733