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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_1878495_1879100_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1878495 - 1879100
Intron Length:
606

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGACA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTGAT
U12 Branch Point Sequence:
TGTTTTTTTCCA
Flanking Amino Acid:
DLGVVVSIGTGNRCVKGEEL
Intron Amino Acid Position:
825

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
74
36.1
Major BPS
68.9
0.47
1.2
60.7
45.9
Major PPT
91.6
0.94
0.7
84.6
36
Minor 5ss
38.6
-1.3
3
49.3
46.7
Minor BPS
42.1
-0.6
3.5
66.95
39.5

Associated Gene:

Gene:
ADAR
Ensembl Gene ID:
ENSAPLG00000009658
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010096
1874142 - 1886874
12733