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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_1880441_1880687_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1880441 - 1880687
Intron Length:
247

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
GCTGTCTTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAG
U12 Branch Point Sequence:
CTGTCTTTACAG
Flanking Amino Acid:
IDQSGPPHDPKFVYQAKVGG
Intron Amino Acid Position:
715

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
79
35.3
Major BPS
71
0.52
1.5
79.6
35.6
Major PPT
79.2
0.66
0.9
72
38
Minor 5ss
37.8
-1.4
2.7
46.1
36
Minor BPS
49.9
-0.1
1.8
55.75
45.9

Associated Gene:

Gene:
ADAR
Ensembl Gene ID:
ENSAPLG00000009658
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010096
1874142 - 1886874
12733