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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_1882056_1883253_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1882056 - 1883253
Intron Length:
1198

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGATTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTCAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTAAC
U12 Branch Point Sequence:
TTTTCTTTCAAA
Flanking Amino Acid:
LEQSGPSHEPRFKFQAVISG
Intron Amino Acid Position:
480

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
0.9
81.9
32.3
Major BPS
71.9
0.54
1.2
75.6
36.6
Major PPT
79.7
0.67
0.9
82
27.2
Minor 5ss
44.4
-0.6
3.2
66.3
44.6
Minor BPS
65.4
0.48
1.8
80.33
35.6

Associated Gene:

Gene:
ADAR
Ensembl Gene ID:
ENSAPLG00000009658
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010096
1874142 - 1886874
12733