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Intron Name: Anas_platyrhynchos_platyrhynchos_26_1930771_1930956_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1930771 - 1930956

Intron Length:

186

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTGAGTCCC

5'SS Class:

strong_major

3'SS Sequence:

CCCCCTCCCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTGAG

U12 Branch Point Sequence:

GATTTCTGAGCG

Flanking Amino Acid:

HLLLVDPEGVVRTKDHRFES

Intron Amino Acid Position:

575

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.7

0.75

0.9

67.6

37.6

Major BPS

67.4

0.43

1.5

65.3

43.7

Major PPT

70.5

0.46

0.7

64.4

Minor 5ss

30.2

-2.3

2.8

Minor BPS

50.6

-0.1

1.8

58.34

42.8

Associated Gene:

Gene:

SHC1

Ensembl Gene ID:

ENSAPLG00000020291

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040956

1930019 - 1938675

8657

ENSAPLT00000040719

1930019 - 1938675

8657

ENSAPLT00000009151

1930019 - 1934774

4756