Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_1931536_1931658_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1931536 - 1931658

Intron Length:

123

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTAATGCGG

5'SS Class:

major

3'SS Sequence:

GTGCTCTTTGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CGCTGAC

U12 Branch Point Sequence:

GCCCCGCTGACT

Flanking Amino Acid:

DPRKQHAPAQAGREKYPAAA

Intron Amino Acid Position:

431

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

65.9

0.37

1.2

47.7

Major BPS

53.9

0.1

1.2

46.4

38.9

Major PPT

79.2

0.66

0.9

37.3

Minor 5ss

29.8

-2.3

3.2

30.4

42.8

Minor BPS

42.8

-0.4

2.3

58.16

44.7

Associated Gene:

Gene:

SHC1

Ensembl Gene ID:

ENSAPLG00000020291

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009151

1930019 - 1934774

4756

ENSAPLT00000040956

1930019 - 1938675

8657

ENSAPLT00000040719

1930019 - 1938675

8657