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Intron Name: Anas_platyrhynchos_platyrhynchos_26_1932341_1932489_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1932341 - 1932489

Intron Length:

149

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGGGCA

5'SS Class:

strong_major

3'SS Sequence:

GTTCCCTTCCCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTGAG

U12 Branch Point Sequence:

ACGCCCCCACCC

Flanking Amino Acid:

YVAKDPVNQRACHILECPEG

Intron Amino Acid Position:

312

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.82

0.9

71.8

33.2

Major BPS

52.2

0.06

1.6

51.1

46.3

Major PPT

77.7

0.62

0.8

69.1

36.9

Minor 5ss

24.1

-3

3.2

29.7

43.3

Minor BPS

40.8

-0.7

47.24

41.8

Associated Gene:

Gene:

SHC1

Ensembl Gene ID:

ENSAPLG00000020291

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040956

1930019 - 1938675

8657

ENSAPLT00000040719

1930019 - 1938675

8657

ENSAPLT00000009151

1930019 - 1934774

4756