About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_1932542_1932673_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1932542 - 1932673
Intron Length:
132

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGTACG
5'SS Class:
strong_major
3'SS Sequence:
TTCCCTCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
GCAGCCCCATCT
Flanking Amino Acid:
SISFASGGDPDTAEYVAYVA
Intron Amino Acid Position:
295

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.76
0.9
71.8
39.7
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
82.5
0.73
0.7
77.1
24.9
Minor 5ss
31.1
-2.2
2.6
35.7
40.4
Minor BPS
40.9
-0.6
2.1
54.67
46.4

Associated Gene:

Gene:
SHC1
Ensembl Gene ID:
ENSAPLG00000020291
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040956
1930019 - 1938675
8657
ENSAPLT00000040719
1930019 - 1938675
8657
ENSAPLT00000009151
1930019 - 1934774
4756