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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_1932728_1933061_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1932728 - 1933061
Intron Length:
334

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGGC
5'SS Class:
strong_major
3'SS Sequence:
CTGTGCCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGATCAT
U12 Branch Point Sequence:
AGGCAGATCATT
Flanking Amino Acid:
LNLMASDCKQIIANHHMQSI
Intron Amino Acid Position:
277

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
0.9
69.4
35.7
Major BPS
64.2
0.35
1.2
65.8
41
Major PPT
76.5
0.6
0.9
69.4
36.8
Minor 5ss
25.3
-2.8
3.2
32.7
42.3
Minor BPS
32.8
-1.2
2.3
46.46
39

Associated Gene:

Gene:
SHC1
Ensembl Gene ID:
ENSAPLG00000020291
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040956
1930019 - 1938675
8657
ENSAPLT00000040719
1930019 - 1938675
8657
ENSAPLT00000009151
1930019 - 1934774
4756