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Intron Name: Anas_platyrhynchos_platyrhynchos_26_1933425_1933908_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1933425 - 1933908

Intron Length:

484

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGCCCT

5'SS Class:

strong_major

3'SS Sequence:

GTGCTCCCCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GACTGAC

U12 Branch Point Sequence:

CCAGCCCAGACT

Flanking Amino Acid:

LDFNTRTQVTREAIGLVCEA

Intron Amino Acid Position:

215

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.3

0.81

0.9

71.4

40.3

Major BPS

55.9

0.15

1.2

Major PPT

69.1

0.43

0.9

62.3

34.7

Minor 5ss

35.1

-1.7

3.1

48.4

47.3

Minor BPS

-0.4

2.1

56.02

46.4

Associated Gene:

Gene:

SHC1

Ensembl Gene ID:

ENSAPLG00000020291

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040719

1930019 - 1938675

8657

ENSAPLT00000009151

1930019 - 1934774

4756

ENSAPLT00000040956

1930019 - 1938675

8657