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Intron Name: Anas_platyrhynchos_platyrhynchos_26_1933980_1934201_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1933980 - 1934201

Intron Length:

222

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTGAGCGCT

5'SS Class:

major

3'SS Sequence:

TGTCCCCCCCCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GGCTGAC

U12 Branch Point Sequence:

CTGGGCTGACCC

Flanking Amino Acid:

MGPGVSYHVRYMGCVEVLQS

Intron Amino Acid Position:

192

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.8

0.61

65.8

40.2

Major BPS

49.4

-0

1.3

42.8

41.8

Major PPT

71.9

0.49

0.8

62.4

34.6

Minor 5ss

33.1

-1.9

3.4

39.6

45.9

Minor BPS

41.8

-0.6

2.1

50.23

46.5

Associated Gene:

Gene:

SHC1

Ensembl Gene ID:

ENSAPLG00000020291

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040956

1930019 - 1938675

8657

ENSAPLT00000040719

1930019 - 1938675

8657

ENSAPLT00000009151

1930019 - 1934774

4756