Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_1934364_1937512_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1934364 - 1937512

Intron Length:

3149

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGCGTACG

5'SS Class:

strong_major

3'SS Sequence:

TGTGTGTTCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GATTCAG

U12 Branch Point Sequence:

CGGCCCCGATTC

Flanking Amino Acid:

GVSGPPCAAEDMNKLSCGKK

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.6

0.75

71.6

Major BPS

50.5

0.01

1.6

63.4

44.3

Major PPT

74.2

0.54

65.1

45.5

Minor 5ss

29.5

-2.3

2.7

34.2

41.4

Minor BPS

39.1

-0.8

1.8

42.22

38.3

Associated Gene:

Gene:

SHC1

Ensembl Gene ID:

ENSAPLG00000020291

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040956

1930019 - 1938675

8657