About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_1937591_1937832_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1937591 - 1937832
Intron Length:
242

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGGCCG
5'SS Class:
major
3'SS Sequence:
CCCCGTGCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGTTCAG
U12 Branch Point Sequence:
TTTCTCTTTGCT
Flanking Amino Acid:
MEYVEDGGRGGLHR
Intron Amino Acid Position:
5

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
59.7
44.8
Major BPS
49.4
-0
1.6
60.7
45.9
Major PPT
67.6
0.4
0.9
60.2
35.4
Minor 5ss
31.2
-2.1
3.2
36.9
41.3
Minor BPS
44.8
-0.3
3.6
81.17
40.3

Associated Gene:

Gene:
SHC1
Ensembl Gene ID:
ENSAPLG00000020291
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040956
1930019 - 1938675
8657