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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_199294_199730_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
199294 - 199730
Intron Length:
437

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAACA
5'SS Class:
strong_major
3'SS Sequence:
TGTCTCTTGCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
CTGACCCTACCT
Flanking Amino Acid:
LAQNPDFAAQIMVNVPLFAG
Intron Amino Acid Position:
385

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
76.8
31.6
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
71.3
0.48
1
65.9
40.9
Minor 5ss
33.1
-1.9
2.9
41.4
44.7
Minor BPS
48.8
-0
2
69.19
47.2

Associated Gene:

Gene:
UBQLN4
Ensembl Gene ID:
ENSAPLG00000009055
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022838
197103 - 206358
9256
ENSAPLT00000009461
197103 - 206752
9650
ENSAPLT00000035863
196812 - 206752
9941