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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_2005043_2007495_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
2005043 - 2007495
Intron Length:
2453

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGCCTCAA
5'SS Class:
weak_major
3'SS Sequence:
CCTTCCCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAC
U12 Branch Point Sequence:
GTGTCTCTAACC
Flanking Amino Acid:
APALPGEQGPGLRREGYTVQ
Intron Amino Acid Position:
35

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
57.9
0.19
1.2
52.2
42.5
Major BPS
72.3
0.55
1
73.3
28.9
Major PPT
82.9
0.74
0.7
76.7
25.3
Minor 5ss
32.1
-2
3
31.7
42.6
Minor BPS
63.2
0.39
1.7
71.8
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002157
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002154
2004939 - 2008818
3880