About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_201143_202390_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
201143 - 202390
Intron Length:
1248

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTCAG
5'SS Class:
major
3'SS Sequence:
CTCCTTCTCGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCTGAA
U12 Branch Point Sequence:
TGGACCTGAACT
Flanking Amino Acid:
MLNNPELMRQTMELARNPAM
Intron Amino Acid Position:
204

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
64.9
42.8
Major BPS
60.8
0.27
1
51.3
35.5
Major PPT
80.5
0.69
0.7
75.8
26.2
Minor 5ss
26.7
-2.7
2.9
30.9
43.2
Minor BPS
66.8
0.61
1.5
78.99
42.4

Associated Gene:

Gene:
UBQLN4
Ensembl Gene ID:
ENSAPLG00000009055
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009461
197103 - 206752
9650
ENSAPLT00000035863
196812 - 206752
9941
ENSAPLT00000029649
197103 - 206752
9650
ENSAPLT00000022838
197103 - 206358
9256