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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_2024341_2024424_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2024341 - 2024424
Intron Length:
84

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGCGGA
5'SS Class:
major
3'SS Sequence:
CCATTTCTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAA
U12 Branch Point Sequence:
ATTTCCTGACCC
Flanking Amino Acid:
DPNSICTNTLGSYKCGPCKS
Intron Amino Acid Position:
456

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1
61.1
39.6
Major BPS
78.2
0.7
1
79.9
32.6
Major PPT
76.7
0.6
0.8
68.7
37
Minor 5ss
30.4
-2.2
3.3
34.8
43.6
Minor BPS
65.8
0.48
1.7
77.95
37.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009936
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010407
2018166 - 2032746
14581
ENSAPLT00000032572
2018166 - 2032746
14581
ENSAPLT00000032175
2023045 - 2028485
5441
ENSAPLT00000028061
2023045 - 2028485
5441