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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_2025181_2025265_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2025181 - 2025265
Intron Length:
85

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
CTCGTCTCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGTTCAT
U12 Branch Point Sequence:
CCCTGCTCACCA
Flanking Amino Acid:
RNTIMECQVCGFHEHRSRCN
Intron Amino Acid Position:
333

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
0.9
81.7
31.9
Major BPS
72.4
0.56
1.2
75
39.9
Major PPT
74.4
0.55
0.8
68.7
31.7
Minor 5ss
33.7
-1.9
3.4
49.9
46.4
Minor BPS
43.1
-0.5
2.2
50.44
47.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009936
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032175
2023045 - 2028485
5441
ENSAPLT00000028061
2023045 - 2028485
5441
ENSAPLT00000010407
2018166 - 2032746
14581
ENSAPLT00000032572
2018166 - 2032746
14581