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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_2025318_2025619_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2025318 - 2025619
Intron Length:
302

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGCGG
5'SS Class:
strong_major
3'SS Sequence:
TGCTGCTTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAGTCAC
U12 Branch Point Sequence:
CCGTCCCTAACA
Flanking Amino Acid:
TDLREDIRDQVKEMSLIRNT
Intron Amino Acid Position:
316

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
60.4
45.8
Major BPS
58.3
0.21
1.1
61.1
36.4
Major PPT
74.6
0.55
0.9
67.9
37.7
Minor 5ss
24.7
-2.9
3
29.5
43.3
Minor BPS
61.7
0.36
1.8
67.66
44.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009936
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032175
2023045 - 2028485
5441
ENSAPLT00000028061
2023045 - 2028485
5441
ENSAPLT00000010407
2018166 - 2032746
14581
ENSAPLT00000032572
2018166 - 2032746
14581