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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_202654_205342_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
202654 - 205342
Intron Length:
2689

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTTATGGGG
5'SS Class:
weak_major
3'SS Sequence:
GTTCCCTCTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
TGTTCCCTCTCC
Flanking Amino Acid:
PVTEAEHFSLAGFGGITGLG
Intron Amino Acid Position:
116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
54.7
0.11
1.3
43.6
43.8
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
79.2
0.66
0.8
69.9
36.6
Minor 5ss
24.6
-2.9
3.1
22.2
37.2
Minor BPS
39.9
-0.7
3.7
67.94
43.3

Associated Gene:

Gene:
UBQLN4
Ensembl Gene ID:
ENSAPLG00000009055
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035863
196812 - 206752
9941
ENSAPLT00000029649
197103 - 206752
9650
ENSAPLT00000022838
197103 - 206358
9256
ENSAPLT00000009461
197103 - 206752
9650