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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_2032248_2032386_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2032248 - 2032386
Intron Length:
139

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTCTC
5'SS Class:
strong_major
3'SS Sequence:
TCCTCTGCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCGGCAC
U12 Branch Point Sequence:
TTGTCCTCTGCT
Flanking Amino Acid:
LLEEKLLPVLIHTFWVDAKN
Intron Amino Acid Position:
127

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
74
36.6
Major BPS
45
-0.3
1.5
51
44.3
Major PPT
78.1
0.63
0.8
72.5
32.3
Minor 5ss
33.5
-1.9
3
41.5
39.2
Minor BPS
42
-0.5
3.7
76.35
46

Associated Gene:

Gene:
MTX1
Ensembl Gene ID:
ENSAPLG00000011453
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020846
2027490 - 2033776
6287
ENSAPLT00000011950
2031574 - 2033776
2203