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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_2032831_2033284_F

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
2032831 - 2033284
Intron Length:
454

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTC|GTACGTGGC
5'SS Class:
weak_major
3'SS Sequence:
CTCTGTTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCATGAC
U12 Branch Point Sequence:
GGGCCCATGACC
Flanking Amino Acid:
LGSQKFFFGDSPASLDAFVF
Intron Amino Acid Position:
213

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.9
0.23
1.4
54.7
43.8
Major BPS
49.9
-0
1.2
43
37.8
Major PPT
76.6
0.6
0.8
68.5
37.3
Minor 5ss
33.5
-1.9
3.4
43.3
38.8
Minor BPS
49.9
-0
1.7
58.36
40.1

Associated Gene:

Gene:
MTX1
Ensembl Gene ID:
ENSAPLG00000011453
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022271
2027415 - 2033776
6362
ENSAPLT00000020846
2027490 - 2033776
6287
ENSAPLT00000011950
2031574 - 2033776
2203