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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_2035933_2036012_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2035933 - 2036012
Intron Length:
80

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
GCATCCCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
CTCCTCTGACCT
Flanking Amino Acid:
DGAVVLVVLNRSPMDVSFGI
Intron Amino Acid Position:
489

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
67
39
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
65
0.34
0.9
54.7
36.3
Minor 5ss
28.1
-2.5
3.1
35.3
41.4
Minor BPS
48.4
-0
1.8
65.4
45.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026914
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044162
2035633 - 2038468
2836
ENSAPLT00000041936
2035633 - 2038468
2836
ENSAPLT00000012037
2035633 - 2038422
2790