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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_2037617_2037744_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2037617 - 2037744
Intron Length:
128

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCACG
5'SS Class:
strong_major
3'SS Sequence:
GCTCCTTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCATCAC
U12 Branch Point Sequence:
ACCCCCATCACC
Flanking Amino Acid:
HLLRSYFSEEGIEYNLVRVP
Intron Amino Acid Position:
136

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
71.4
40.3
Major BPS
53.4
0.09
1.1
57.3
37.7
Major PPT
73.7
0.53
0.8
65
36.3
Minor 5ss
34.3
-1.8
2.8
40.4
45.5
Minor BPS
46.3
-0.3
2
54.96
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026914
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041936
2035633 - 2038468
2836
ENSAPLT00000012037
2035633 - 2038422
2790
ENSAPLT00000044162
2035633 - 2038468
2836