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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_2041820_2041952_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2041820 - 2041952
Intron Length:
133

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTCGG
5'SS Class:
major
3'SS Sequence:
TCCCCTCCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGGCAT
U12 Branch Point Sequence:
ATCCCCTGGAGC
Flanking Amino Acid:
QPMFYHMGHFSKFIPEGSRR
Intron Amino Acid Position:
464

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
59.7
46.7
Major BPS
49
-0
1.5
60.7
45.9
Major PPT
78.7
0.65
0.7
72.7
25.4
Minor 5ss
26.8
-2.7
2.9
31.8
42.6
Minor BPS
48
-0.1
1.8
58.34
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011535
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012006
2041520 - 2045132
3613