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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_2043342_2043454_R

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
2043342 - 2043454
Intron Length:
113

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTACCATTC
5'SS Class:
weak_major
3'SS Sequence:
TCCCCTCTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCAGCAT
U12 Branch Point Sequence:
GAGGCCAGCATC
Flanking Amino Acid:
YHKTWANYFIKFLDEYAKHN
Intron Amino Acid Position:
256

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.3
0.22
1.2
60.8
39.5
Major BPS
45.4
-0.2
1.4
51.3
42.7
Major PPT
76.4
0.59
0.7
68.3
31.9
Minor 5ss
48.7
-0.1
3.1
67.7
37.5
Minor BPS
37.8
-0.9
2
42.01
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011535
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012006
2041520 - 2045132
3613