Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_2044090_2044223_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2044090 - 2044223

Intron Length:

134

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTGAGCAGC

5'SS Class:

major

3'SS Sequence:

TCCTTCTCCGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTCCT

U12 Branch Point Sequence:

CTTTCCTTCTCC

Flanking Amino Acid:

NLLQSYFSENGIEYNLVRVP

Intron Amino Acid Position:

154

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.5

0.6

63.5

42.9

Major BPS

34.7

-0.9

4.2

39.9

Major PPT

80.9

0.69

0.7

76.4

25.7

Minor 5ss

34.8

-1.7

2.9

43.9

43.7

Minor BPS

45.9

-0.3

3.6

73.85

43.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000011535

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012006

2041520 - 2045132

3613