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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_2044889_2045110_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2044889 - 2045110
Intron Length:
222

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGCTCC
5'SS Class:
major
3'SS Sequence:
TCTGCTCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
GTGCCCCCCACT
Flanking Amino Acid:
MASGTEAGLPEPRGRGG
Intron Amino Acid Position:
8

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
62.8
38.8
Major BPS
72
0.55
1
71.8
31.4
Major PPT
74.5
0.55
0.8
65.7
36
Minor 5ss
38.3
-1.3
3.2
50.4
46.4
Minor BPS
43.6
-0.4
2.2
63.62
45.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011535
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012006
2041520 - 2045132
3613