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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_2049165_2049312_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2049165 - 2049312
Intron Length:
148

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTCGG
5'SS Class:
major
3'SS Sequence:
CTTACTCGTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCTCAT
U12 Branch Point Sequence:
TTGGCCTTACTC
Flanking Amino Acid:
QPMFYHMGHFSKFIPEGSQR
Intron Amino Acid Position:
550

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
59.7
46.7
Major BPS
73.5
0.58
1
73.6
32.5
Major PPT
74.9
0.56
0.9
69.2
36.8
Minor 5ss
26.8
-2.7
2.9
31.8
42.6
Minor BPS
60.7
0.31
1.8
69.56
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011544
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041701
2048187 - 2082700
34514