Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_2049477_2049590_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2049477 - 2049590

Intron Length:

114

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTGAGAGCC

5'SS Class:

major

3'SS Sequence:

TCTCCTGTTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GGCAGAC

U12 Branch Point Sequence:

TTGGGCAGACGT

Flanking Amino Acid:

GNQYSHSILTNLNHFVAGWT

Intron Amino Acid Position:

496

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.6

0.63

63.4

35.3

Major BPS

42.6

-0.4

1.2

32.1

34.8

Major PPT

81.6

0.71

0.8

32.4

Minor 5ss

26.7

-2.7

3.2

34.9

41.1

Minor BPS

34.3

-1.1

2.3

52.97

47.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000011544

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041701

2048187 - 2082700

34514