Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_2050692_2050816_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2050692 - 2050816

Intron Length:

125

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGGAGT

5'SS Class:

strong_major

3'SS Sequence:

CCGTGTGTGGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATCCCAA

U12 Branch Point Sequence:

CCTATCCCAACC

Flanking Amino Acid:

HLLRSYFSEEGLEYNLVRIP

Intron Amino Acid Position:

239

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.7

0.86

0.8

78.6

37.3

Major BPS

54.3

0.11

1.2

64.5

33.7

Major PPT

61.5

0.26

1.1

56.6

43.4

Minor 5ss

28.5

-2.5

3.1

39.7

45.9

Minor BPS

45.8

-0.3

1.9

55.51

42.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000011544

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041701

2048187 - 2082700

34514