Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_2055817_2056105_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2055817 - 2056105

Intron Length:

289

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCG|GTAGGTGGG

5'SS Class:

major

3'SS Sequence:

TTTGTGCTTCCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTGAAT

U12 Branch Point Sequence:

CAAACTTTGAAT

Flanking Amino Acid:

DPGVLMVGDTADFREVLYTK

Intron Amino Acid Position:

516

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.1

0.57

1.1

58.3

46.6

Major BPS

74.6

0.61

1.4

34.5

Major PPT

82.6

0.73

0.9

73.5

41.8

Minor 5ss

31.2

-2.2

3.4

46.1

Minor BPS

50.7

0.1

1.5

62.41

41.4

Associated Gene:

Gene:

FAM189B

Ensembl Gene ID:

ENSAPLG00000011814

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012299

2054074 - 2059235

5162