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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_205675_206341_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
205675 - 206341
Intron Length:
667

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GGG|GCGAGGAGA
5'SS Class:
major
3'SS Sequence:
ATGATACCCGGAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TGATGAT
U12 Branch Point Sequence:
CTTACCCCATTT
Flanking Amino Acid:
GGGGRGVIFPFLAPA
Intron Amino Acid Position:
6

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.2
64.9
39.2
Major BPS
69.5
0.48
1.2
59.7
46.7
Major PPT
46.7
-0.1
1.7
48.3
40
Minor 5ss
15.4
-4
3.3
13.1
28.4
Minor BPS
44.5
-0.3
2.1
65.73
44.9

Associated Gene:

Gene:
UBQLN4
Ensembl Gene ID:
ENSAPLG00000009055
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022838
197103 - 206358
9256